RNA-Seq: TFA analysis of SC Controls

TFA analysis

Transcription Factor Binding Affinity analysis is performed using Virtual Inference of Protein-activity by Enriched Regulon analysis (VIPER) algorithm.

Regulon is a group of genes that are regulated as a unit, generally controlled by the same regulatory gene that expresses a protein acting as a repressor or activator.

More details: 10.1038/ng.3593

Results

Volcano plots

All regulons

Filtered regulons

UpSetPlot

Tables

All regulons

PND8 vs PND15

PND15 vs Adult

Filtered regulons

PND8 vs PND15

PND15 vs Adult

SessionInfo

## ─ Session info ──────────────────────────────────────────────────────────
##  setting  value                       
##  version  R version 3.6.1 (2019-07-05)
##  os       Ubuntu 16.04.6 LTS          
##  system   x86_64, linux-gnu           
##  ui       X11                         
##  language (EN)                        
##  collate  en_US.UTF-8                 
##  ctype    en_US.UTF-8                 
##  tz       Europe/Zurich               
##  date     2019-09-02                  
## 
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Deepak Tanwar

Created on: 2019-05-13
Updated on: 2019-09-02